FunctionLab / ExPecto

predicting expression effects of human genome variants ab initio from sequence

FunctionLab/ExPecto Issues

Beluga output.
Updated 8 months ago
How to load the model shown in this repo
Updated 8 months ago4
GRCh38 vs hg19
Updated 9 months ago2
Cannot find out the Xreducedall.2002.npy
Closed 9 months ago
Getting Beluga outputs before spatial transformation
Updated a year ago
Download resources link no longer active
Closed a year ago2
Could expecto accepts fasta input and return the prdicted tissue-specific expression values?
Updated 2 years ago2
Sequences < 1,000bp
Updated 2 years ago9
Cell Line Description for Belgua
Closed 2 years ago2
Ordering of 2002 output tasks of deepsea beluga model
Closed 5 years ago1
How to repeat file Xreducedall.2002.npy for another organisms
Updated 2 years ago4
Availability of embeddings for deepsea.beluga model
Closed 5 years ago5
averaging forward and reverse strand from output of chromatin.py
Updated 3 years ago2
The representative TSS site
Updated 4 years ago1
difference of the result between predict.py and website (HumanBase)
Updated 4 years ago1
About the download of 2002 feature files
Updated 4 years ago6
module 'pandas' has no attribute 'match' while running predict.py
Closed 5 years ago1
System requirements for larger input
Updated 5 years ago
NA values after using BEDOPS closest-features to get associated genes
Closed 5 years ago2
Regarding chromatin.py
Closed 5 years ago1
Replicating features in resources/Xreducedall.2002.npy
Updated 5 years ago2
Discrepancy between architecture in paper and architecture in deepsea.beluga.2002.cpu
Updated 5 years ago1
Some problem in “chromatin.py”, about"deepsea.beluga.2002.cpu" and “Xreducedall.2002.npy”
Closed 5 years ago
Training data
Closed 5 years ago5
Memory requirements
Closed 6 years ago2
Incorrect file permissions
Closed 6 years ago1
License for ExPecto
Closed 6 years ago1
Treatment of TSS itself
Closed 6 years ago2
About Constraint violation score
Updated 6 years ago10
geneanno.exp.csv missing one line?
Closed 6 years ago3
Regarding log fold change and predict.py description
Closed 6 years ago1