Legume Federation

cvitjs

CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.

gcvit

CViT based tool for visualising VCF files.

cmap-js

Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).

blat-server-docker

Interface-and-Usability

Repo for tracking issues on LegFed interface and usability

lorax

a web server that "speaks for the (phylogenetic) trees"

Outreach

Tracking activities related to interfacing with other groups (primarily users and non-funded federation members)

tripal_blast

LegFed development repository for Tripal Blast. For official releases & documentation go to drupal.org

Workshops

A repository for resources and task management relating to workshops hosted for the project

integrate-medtr-hapmap

Repository for managing tasks related to integrating the Medicago HapMap data into LegFed

jbrowse-docker-slim

Minimal Docker image containing JBrowse JavaScript components + NGINX HTTP server

legfed-django-site

Django CMS www.LegumeFederation.org

legfed_theme

drupal theme for legfed website

ontology_search

Tripal extension module that carries out hierarchical ontology searches

TraitLoader

Perl loading scripts for QTL, map and marker data designed for Tripal/chado

Traits

Handling of traits within Legume Federation software components, and recommendations to data curators.

tripal

The Tripal "core" package, a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. Please use the Drupal project's issue queue at https://www.drupal.org/project/issues/tripal for bug reports and requests.

bio-format-tools-go

Tools for converting common biological data file formats

coge-api

A high-level Java API for retrieving, adding, updating and deleting CoGe data via its REST API. Uses Resty.

datastore-public

A web-based file browser for iRODS with metadata-based templating.

DSCensor

Visualization and Organization for Assembly and Annotation Data

Federation

Code and issues around federation

gruence

consistency and other filter properties in gene families

legfed_gene_families

A repository for managing tasks relating to the production of gene families for use by the Legume Federation

legumefederation.org

issues pertaining to the project website

Meetings

Planning for meeting talks and posters

meta_iron

a tool that flattens and regularizes metadata

qoopty

A vehicle for queue-backed web services

Seq2Tree

A Tripal module for placing sequence on a phylogenetic tree.

supervisor

Supervisor process control system for UNIX