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LanLab's repositories

Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies

Language:PythonGPL-3.012 2 3

The Staphylococcus aureus Lineage Typer (SaLTy)

Language:PythonGPL-3.05 3 4

Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers

Language:PythonGPL-3.05 2 3

Dynamic Outbreak Detection for Genomic Epidemiology

Language:PythonGPL-3.04 30

A package to identify SNPs using reference-free assembly

Language:PerlGPL-3.03 3 1

Multi-level Genome Typing

Language:PythonGPL-3.02 40

Install a local blank version of the MGT database

Language:JavaScriptGPL-3.02 3 1

A python script for accurate assignment of ANI genomic species to Campylobacter genomes.

Language:PythonGPL-3.01 30

Conda recipes for the bioconda channel.

Language:ShellMIT010

Pipeline for converting raw reads into alleles for submission to the MGT website

Language:PythonGPL-3.0040

Language:PythonMIT030

Where is Insertion Sequence

Language:PythonGPL-3.0030

A script to examine amplicon sequencing of multiplex PCR assays

Language:PythonGPL-3.0020

Script to check for falsely split orthologues in roary outputs

Language:PythonGPL-3.0030