LTLA / scRNAseq

Clone of the Bioconductor repository for the scRNAseq package.

Home Page:http://bioconductor.org/packages/devel/data/experiment/html/scRNAseq.html

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Add a Bunis HSPC data getter

LTLA opened this issue · comments

@dtm2451 the time has cometh. Should be as simple as copying one of the other getters to BunisHSPCData.R, renaming the function and changing the path to bunis-hspc.

  • Make sure you set rowdata=TRUE in .create_sce() to get the row data.
  • Add yourself to Authors@R.
  • Add the dataset to inst/extdata/manifest.csv.
  • Add some basic tests to longtests/.

So, uh, Dr Bunis. Any plans for this, or what?

Yes yes! Fell off my radar, but it's back on for this week. I'll put something together by the weekend.

I'm not sure of the best ways to convert from dgT to dgC, but the counts matrix is already dgT right out of

mat <- Matrix::readMM(mat.path)
.

Might as well add the conversion right around there, no?

Oh crap, didn't notice that's where it was coming from. Yes, the conversion would be done there. I can do that myself.