LREN CHUV's repositories
ansible-airflow
Ansible role for the installation of Apache Airflow
airflow-imaging-plugins
Set of plugins helping to work with imaging data in Airflow.
data-tracking
This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.
python-base-docker-images
Collection of Docker images for Python, including the base images created for the Algorithm Factory / Woken
algorithm-repository
Repository of functions or algorithms packaged (with Docker) for Algorithm Factory/Woken
data-factory-airflow-dags
DAGs adapting the MRI preprocessing pipeline to Airflow
pfa-validator
Validation of the PFA model and its predictive algorithm
portal-backend
Backend for the MIP portal
woken-validation
Cross-validation module for Woken, using Spark and PFA
data-db-setup
Setup for the database containing features data
i2b2-import
This library provides functions to import data into an I2B2 DB schema
mip-microservices-infrastructure
Generic version of the scripts used to deploy the Medical Informatics Platform
woken-messages
Shared library containing the API and messages used in Woken applications
mip-cde-meta-db-setup
Meta DB setup based on our selection of common variables (MIP CDE)
ehr-to-i2b2
Import EHR data to I2B2.
i2b2-flattening
Generate a flat CSV file from an I2B2 data (containing brain features, demographic data, etc).
java-base-docker-images
Collection of Docker images for Java, including the base images created for the Algorithm Factory / Woken
mip-brain-insights
A brain atlas viewer with region-specific data
Neuro_Atlasing
Matlab script for the segmentation of individual T1w images into brain regions defined by SPM12 Neuromephometric atlas.
nmm-pipeline-output-merge
Merge individual MIP formatted output from the NMM pipeline into one single CSV file.
portal-frontend
Frontend for the MIP portal
web-analytics-demo
Launch the MIP web-analytics components using docker-compose