Laboratory of Experimental Biophysics - EPFL

DEFCoN

Single molecule density estimation by fully convolutional neural networks

SASS

Toolkit for simulating real-time control systems for super-resolution microscopy.

ALICA

Automated Laser Illumination Control Algorithms

WGmode

2D simulation functions for slab and ridge waveguide mode study

EDA

Tools for adaptive imaging in the LEB-EPFL

eda_plugin

Plugin for event-driven acquisition to be used with Micro-Manager

DEFCoN-ImageJ

An ImageJ plugin for DEFCoN, the fluorescence spot counter based on fully convolutional neural networks.

MitoSplit-Net

Detection of mitochondrial divisions with neural networks

MitoWorks

Collection of MATLAB functions for analysis of mitochondrial shape and dynamics.

mm-docker

Dockerfiles for building Micro-Manager components.

project_layout

ptycho

Hardware control and image analysis code for Fourier ptychography.

eda-napari

event-driven-acquisition plugin for napari

fifi_parts_list

The parts list for FIFI, the flat-field illuminator for large field of view localization microscopy.

sDaDa

Shape Dynamics Automated Data Analysis

tracking-and-diffusion

python-isim-control

Python Control Interface for the iSIM at LEB-EPFL

ALICA_ACPack

Analyzer and controller implementations for ALICA.

ALICA_interfaces

Interfaces to the primary components of ALICA.

deep-events

Scripts and notebooks for annotation and handling of phase and fluorescent data for preparation and training of neural networks for event detection.

ImageInjector

A simple plugin for injecting images into Micro-Manager's demo camera.

imajin

Tools to simulate optics and microscopy experiments.

iSIM

iSIM control and analysis software

kpal

Hardware control for experimental science

led-array-datasets

napari-eda-highlight-reel

pymm-eventserver

Event Server to receive Micro-Manager events in python via zeromq

rats

High performance probabilistic state machine simulator

StormChaser

DEMO 3D Double-Helix localization software

Zeiss-microscope

This is a wiki page for the labs Zeiss Axio Observer 7 microscope