LCObus / napari-segmentation-workshop

workshop materials for biologists performing cell segmentation in napari

napari Segmentation learning course

Course materials for biologists performing cell segmentation in napari

Site here: https://chanzuckerberg.github.io/napari-segmentation-workshop/

Usage

Building the book

If you'd like to develop and/or build the napari Segmentation Course book, you should:

1. Clone this repository
2. Run pip install -r requirements.txt (it is recommended you do this within a virtual environment)
3. (Optional) Edit the books source files located in the content/ directory
4. Run jupyter-book clean content/ to remove any existing builds
5. Run jupyter-book build content/

A fully-rendered HTML version of the book will be built in content/_build/html/.

Code of Conduct

This project adheres to the Contributor Covenant code of conduct. By participating, you are expected to uphold this code. Please report unacceptable behavior to [e-mail].

Reporting Security Issues

If you believe you have found a security issue, please responsibly disclose by contacting us at [e-mail].

Credits

This project is created using the excellent open source Jupyter Book project and the executablebooks/cookiecutter-jupyter-book template.