Kuhlman-Lab / ThermoMPNN

GNN trained to predict changes in thermodynamic stability for protein point mutants

Kuhlman-Lab/ThermoMPNN Issues

scoring stability change for higher-order mutants
Updated 2 months ago
Bug in color scale of 3D representations in the Colab implementation
Closed 2 months ago1
Import Issues caused by sys.path.append()
Updated 2 months ago1
Might want to add a section about editing the local.yaml file
Closed 2 months ago1
The fireprot csv in data_all
Closed 4 months ago1
Residue index starts at 0 for heatmap (and csv output)
Closed 4 months ago1
Issue with MSE
Closed 5 months ago1
mask_attend calculation
Closed 5 months ago1
Fireprot Results
Closed 6 months ago1
FileNotFoundError: 4_fireprotDB_bestpH.csv
Closed 6 months ago3
Hardcoded paths
Closed 6 months ago
TheroMPNN run error
Closed 6 months ago7
How does "include Cysteines" option affect the prediction results?
Closed 7 months ago5
Correlation Coefficients
Closed 7 months ago1
Exploring the Detailed Steps of Utilizing a Custom PDB File
Closed 7 months ago2
Tying Positions For Multichain and Single Chain Inference
Closed 7 months ago1
PDBs
Closed 7 months ago1
Is prediction taking into account other chains?
Closed 8 months ago2
version of the CUDA torch environment for ThermoMPNN
Closed 9 months ago2
The problem of positive and negative ddG in the Mega scale dataset
Closed 9 months ago1
Where can I find fireprotDB-pdbID-corrections.csv?
Closed a year ago2