KristinaUlicna

DeepTree

Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.

CellComp

Python Scripts to my Cell Competition project contribution. Looking at pure WT cell populations to identify patterns of CSC.

KristinaUlicna

Welcome to my GitHub profile 👋 full of #DeepLearning #SingleCell #DataScience repositories 👩‍💻 from my #PhD #research #project 👩‍🔬 & beyond!

BayesianTracker

Bayesian multi-object tracking

CellTracking

Cell tracking using TensorFlow and BayesianTracker

unet_segmentation_metrics

Metrics for determining segmentation accuracy

cellx-predict

Explainable AI model of cell behavior

kristinaulicna.github.io

NanoPush

Python Scripts to my PhD rotation project, contributing to development of machine learning-based single-step DNA methylation caller 'NanoPush'.

sequitr

Microscopy image processing with TensorFlow

cnn-annotator

Annotate microscopy images for CNN classifier

Deep-Learning-Book-Chapter-Summaries

Attempting to make the Deep Learning Book easier to understand.

emoji-cheat-sheet

A markdown version emoji cheat sheet

arboretum

Track and lineage visualization with btrack and Napari

BIOC0016-MachineLearning

BIOC0016 Machine Learning practical

cellx

DL/ML tools for CellX project

HPA-Cell-Segmentation

Molecules

napari-btrack

Napari plugin for btrack

octopuslite-reader

reader for octopuslite data