Kristina Gagalova's repositories
Maker2NCBI
Process and submit output from MAKER to NCBI
pante2-legacy
🍄 🧬An (improved) pipeline for predicting and masking transposable elements in multiple fungal genomes.
pod5_nanopore_tools
Set of scripts to manage fast5 and pod5 files from Nanopore sequencing
Spruce_genomes
Updated results of the spruce giga-genomes paper - Gagalova et al., 2022
SpruceGenomeAnnotation
Methods used for the annotation of PG29, WS77111 and Q903 :evergreen_tree:
awesome-nanopore
A curated list of awesome nanopore analysis tools.
bioconda-recipes
Conda recipes for the bioconda channel.
deep-DNArt
repository of the code produced during the Copenhagen Bioinformatics Hackaton
MyBioinformaticsAdventure
More on my research and PhD projects
PHD_projects
spruce projects during my PhD thesis
PhyloGeneFamilies
Cluster gene families and display phylogeny tree by species
weevil_genome_assembly
Supplementary data and scripts used in the manuscript :cockroach:
Jbrowse-tools
Scripts to process samples for JBrowse2
Nextflow-Workflow-Template
Template example of modular structure in Nextflow
seqrenamer
Renames ids in fasta, gff3, tsv, and csv files.