Thomas Krannich's repositories
PopIns2_snakeproject
Snakemake workflow for PopIns2
bioinfLatexStyles
Bibtex compatible latex templates for a selection of Bioinformatics and Genomics journals
CoVpipe2
SARS-CoV-2 genome reconstruction for Illumina data in Nextflow
Language:NextflowGPL-3.0000
PopIns2
Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
Language:C++GPL-2.0000
poreCov
SARS-CoV-2 workflow for nanopore sequence data
Language:NextflowGPL-3.0000
SURVIVOR
Toolset for SV simulation, comparison and filtering
Language:C++MIT000
SVDSS
Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
Language:C++MIT000
VariantSurvival
VariantSurvival a Shiny app/ R package to identify genotype-treatment response