Kingsford-Group

scallop

Scallop is a reference-based transcriptome assembler for RNA-seq

squid

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

variantstore

VariantStore: A Large-Scale Genomic Variant Search Index

omhismb2019

biblint

BibLint -- a system for fixing bibtex databases

rnaseqtools

toolkit to process gtf files

libgff

A simple GFF/GTF parsing library in C++

rlzgraph

Create genome graph structures via RLZ compression.

CAS_code

mdsscope

Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph

frankentad

Code for the manuscript "Capturing the complexity of topologically associating domains through multi-feature optimization", Natalie Sauerwald and Carl Kingsford.

graphhic

vsbo

gtedemedtest

gtednewilp

ILP solutions for computing Graph Traversal Edit Distance

maskedminimizer

maskedminimizerismb23

rlliquidhandler

autoparadvisor

deepminimizer

dlerrorcorrectrna

fedpnas

glitter

maskedmnz

maskminimizer

minhhoangthesisproposal

mrngb

rlforlqh

subgraphquantanalysis

turnpikesolvermm