Yewei Lu's repositories
BacWGSpipe
A Snakemake workflow for a complete analysis of bacterial whole-genome sequencing data.
bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
gatk-mitochondria-pipeline
Snakemake workflow for GATK SNP and INDEL variant calling on mitochondria DNA
GWA_tutorial
A comprehensive tutorial about GWAS and PRS
hub-mirror
🚀 gcr.io、registry.k8s.io、k8s.gcr.io、quay.io、ghcr.io 等国外镜像加速下载服务
microbial_AMR_ML
Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)
MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
mykrobe
Antibiotic resistance prediction in minutes
TB-Resources
List of online databases and resources for Mycobacterium Tuberculosis
TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Utilities
General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)
UVP
Mycobacterium tuberculosis next generation sequence analysis
Wochenende
A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3