Kankan Zhao's repositories
phamb
Downstream processing of VAMB binning for Viral Elucidation
warming-network-complexity-stability
Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
What_the_Phage
WtP: Phage identification via nextflow and docker or singularity
viralClust
Small pipeline to cluster viral genomes based on their k-mer content. WiP
DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
biocode
Bioinformatics code libraries and scripts
TO-GCN
Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data
anuran
Toolbox for identification of non-random associations
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
DeephageTP
DeephageTP: an alignment-free deep learning framework for identifying phage-specific proteins from metagenomic datasets
DDLSA
Data-driven Local Similarity Analysis
metabolisHMM
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
reveal.js
The HTML Presentation Framework
SOCDRaHR2
This is an R package that haromonizes some digitial soil repositories.
VIBRANT
Virus Identification By iteRative ANnoTation
mmvec
Neural networks for microbe-metabolite interaction analysis
mzmine2
MZmine 2 source repository
metatlas
Metabolite Atlas Main Repository
Stability-metrics
code to analyse the database of stability metrics
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
learn-regex
Learn regex the easy way