KaminskyJ / CHESS-Tomography-Extension

Code used for processing and filtering tomographic data at CHESS.

CHESS Tomography Extension 1.0

Overview

This module is an extension for tomopy 1.0.1. It allows users to process raw tomographic data through automation and GUIs.

It is designed to decrease the amount of variables necessary to complete reconstructions and increase ease of use, while still maintaining the flexability of tomopy.

By reading this manual and using the template, a new user should be able to complete a full reconstruction with no edits to any code besides the initial inputs.

For extensive instructions, see instructions.pdf.

Dependencies

python 2.7
tomopy 1.0
matplotlib 2.1
ipython 5.4
h5py 2.7

Initial Data Format

There are two pieces of data that must be loaded in order for proper reconstruction: the tomographic image stack, and theta values for the stack. These should be in the format [elements, rows, angles, columns] and [radians] respectively.

This data should be packaged into an hdf5 file as seperate data sets. This can be done using the save() method included in this module.

Contact

Any questions or suggestions can be sent to [e-mail].