KaiqiangLiu's repositories
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
bioperl-live
Core BioPerl 1.x code
canu
A single molecule sequence assembler for genomes large and small.
ergatis
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.
GC-content-in-sliding-window-
Calculate GC% and GC deviation for circular genomes
informatics-tools
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
metagenome_assembly
Scripts to analyse and process the files produced in the MSc Project "A comparison of metagenomic assembly software"
miscperlscripts
Small collection of random useful perl scripts
MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
phtools
various tools. Mostly shell, perl and R
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
neo
noctua entity ontology
nextflow-annotate
Workflows I find helpful for fungal genome annotation
Parsing-RepeatMasker-Outputs
Few scripts facilitating the extraction of info from Repeat Masker .out files
Shiny
Shiny app by R for visualization and analysis
stampython
Telegram bot for controlling karma on telegram group chats
Takifugu_project
The pipelines and scripts used in Takifugu comparative genomics project