KYQiu21

Kaiyu (Rossmann) Qiu's repositories

bridging_theme_hmmer

Language:Python010

CRM2.0

Language:Python010

DeepDrug3D

A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.

Language:PythonGPL-3.0010

DeepUrfold_kqiu

Explore protein fold space with deep generative models

Language:PythonCC0-1.0000

evolution

This repository contains the code for our manuscript - 'A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences'

Language:Jupyter NotebookMIT010

gpvolve

A Python API for computing evolutionary paths across genotype-phenotype maps and clustering of genotype-phenotype maps.

Language:PythonMIT010

iGEM2020WHU

020

Kaiyu-Qiu

020

notebooks-nonlinear-high-order-epistasis

Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"

Language:Jupyter Notebook010

Promoter-Landscape-Project

020

PyTorch-VAE-4-Evol

A Collection of Variational Autoencoders (VAE) in PyTorch.

Language:Jupyter NotebookApache-2.0000

RdRP_evolution

020

rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

Language:PythonBSD-2-Clause010

tyleransom.github.io

Language:HTML010