KChen-lab's repositories
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lad
Visualization and analysis of single-cell RNA-seq data by alternative clustering
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INVAX_manuscript
Scripts/Codes for INVAX project paper
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NK_CEBPD_manuscript
Scripts/Codes for NK CEBPD paper
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MCL_ML_Project
Code for models and visualizations for HHill's MCL ML project.
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Data-Analysis-of-Variant-Functional-Effects
Data analysis for manuscript submission
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CCAdge
Detection of disease-associated genes from single cell data
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epiNB
Efficient and interpretable HLA-I binding peptide identification
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sensei
Sample size estimation for single cell studies
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stratified-tests-for-seurat
Stratified statistic hypothesis tests for Seurat
Cyclum-GP
A more flexible version of Cyclum, utilizing GPLVM with periodic kernel
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Cyclum-Demo
A self-contained demo of Cyclum, ships with the mESC data
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tf-rna-atac
Clustering transcription factors based on expression and chromatin openness
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