School of Biomedical Engineering & Imaging Sciences

niftyreg

This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities

VS_Seg

Automatic Segmentation of Vestibular Schwannoma with MONAI (PyTorch)

NiftySeg

ScribbleDA

ExeTera

Reproducible analysis pipelines for large tabular datasets

AdvancedMachineLearningCourse

Advanced Machine Learning Course

pymagewell

Python library for interfacing with Magewell ProCapture frame grabbers

KCL-DGX-cluster-documentation

spectrumdevice

Python library for communicating with digitisers manufactured by Spectrum Instrumentation

vs-koos-classification

Scripts for Automated Koos Classifcation of Vestibular Schwannoma

DASHER

Data Anonymisation and Synchronisation for HEalthcare Research

RandomDataset

Generates random tabular datasets for testing and fun

runai_custom_conda_docker

TWAISurgRob-OSS-List

A list of open-source software projects related to the CME - Pillar 3

OOP

Updated course for OOP module

xnat_python_scripts

Set of python scripts used to interact with XNAT mostly via the rest

gif

labsnake

Real-time scientific data acquisition, analysis and visualisation desktop application in Python

MONAI_JADE_Workshop

Materials for workshop on using MONAI on JADE or other HPC environments

trajectory_replay

xnat_form_maker

Script to generate XNAT Form Plugins from Excell spreadsheets and RedCap Data Dictionaries

ai4vbh_defacing

ExeTeraR

ExeTera R Wrapper Code

bundle-data

Repository for storing MONAI bundle data

ExeTeraEval

A set of scripts and functionality for evaluating ExeTera performance

LazyResampling

A reference implementation of lazy resampling for pytorch

MultiViT

oop-course-practice-session

Used to host files for the OOP practice session

SonicNeedle

Arduino and Python code for ultrasound needle tracking demo at New Scientist Live 2022

SpineAnnotationSlicelet

Slicelet module to facilitate annotation of vertebrae from data stored on XNAT