KC-Lan

kc-lan.github.io

espresso

eSPRESSO

KC-Lan

spresso

SPRESSO (Spatial Reconstruction by Stochastic Self-Organizing map)

bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

clusterProfiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cmapR

R

ComplexHeatmap

Make Complex Heatmaps

DataAnalyticsWithRBook

介紹如何使用R完成資料讀取、處理、分析與呈現，以及大數據技術與R的整合

DGE_workshop

fgsea

Fast Gene Set Enrichment Analysis

gatk

Official code repository for GATK versions 4 and up

gdrive

Google Drive CLI Client

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

Interactive-3D-Plotting-in-Seurat-3.0.0

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

loomR

An R-based interface for loom files

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Python-100-Days

Python - 100天从新手到大师

RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scRNA.seq.course

Analysis of single cell RNA-seq data course

scvelo

RNA Velocity generalized through dynamical modeling

SecondRound

初學者寫給初學者的演算法教學

seurat

R toolkit for single cell genomics

seurat-wrappers

Community-provided extensions to Seurat

Slideseq

sports1.0

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

STAR

RNA-seq aligner

STEM_DREM

Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)

velocyto.R

RNA velocity estimation in R