Kang Jin's repositories
COVID-19-Atlas
Re-analyze public COVID-19 single-cell RNA-seq data
scRNA-seq_Hepatoblastoma
Analysis of single-nuclei RNA-sequencing data of Hepatoblastoma
CellDrift_analysis
Code for analysis in the CellDrift paper
ToppCellPy
ToppCell (https://toppcell.cchmc.org/) is a web portal designed for biologists and bioinformaticians to explore single-cell RNA-seq data swiftly in the era of single cell and high throughput sequencing. Now we enable the visualization function using Python, making it flexible and standalone. It's still improving and your suggestions are really appreciated.
Bering
GCN-based Segmentation Method for single-cell spatial transcriptomics data
ClusterMap
ClusterMap for multi-scale clustering analysis of spatial gene expression
NRXN1_effects
codes for single-cell analysis of NRXN1_del effects in human brain organoids
pytorch_geometric
Graph Neural Network Library for PyTorch
scTriangulate
scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions
test_git
I want to use this repo to understand some operations of git