Depends: R (>= 3.0.1), pcaMethods (>= 1.50.0), mnormt (>= 1.5-1), mclust (>= 4.3)
==================INSTALL (on Mac’s)================================
to install, open terminal and type:
R
then type:
install.packages(<path_to_package>, repos = NULL, type="source")
p.s. this <pathtopackage> must be in “”
load the package by typing
library("pcaReduce")
p.p.s. type ?PCAreduce to see description
=================EXAMPLE===========================================
DATA:
is in Pollen2014.txt, cluster labels and additional information is in SupplementaryLabels.txt
CODE:
pcaReduce_example.R — an example code how to use pcaReduce package
===================================================================
Paper info:
"pcaReduce: hierarchical clustering of single cell transcriptional profiles"
by Justina Žurauskienė, Christopher Yau
DOI: 10.1186/s12859-016-0984-y
===================================================================
J.