Justin Chu's repositories
JupiterPlot
A Circos-based tool to visualize genome assembly consistency
STAT545A_MovieStats
Exploratory analysis of Movie preference data set from http://grouplens.org/datasets/movielens/
stat540_2014
STAT540 Statistical Methods for High Dimensional Biology, January - April 2014
bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
bioconda-recipes
Conda recipes for the bioconda channel.
cjustin.utils
Package containing a personal set of function for R.
compact_vector
Bit packed vector of integral values
FastqMultiThreadProducerConsumer
Example program for efficient multithread producer-consumer I/O with kseq
homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers
homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
PackedArray
Random access array of tightly packed unsigned integers
SaveOurShip2Experimental
Experimental branch of Save Our Ship 2
spaced-seeds
Scripts to empirically show how spaced seed entropy is related to their sensitivity for homology search.