JustinChu

JupiterPlot

A Circos-based tool to visualize genome assembly consistency

ntsm

This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to discover incongruent samples or sample swaps.

STAT545A_MovieStats

Exploratory analysis of Movie preference data set from http://grouplens.org/datasets/movielens/

adv-r

Advanced R programming: a book

stat540_2014

STAT540 Statistical Methods for High Dimensional Biology, January - April 2014

REX-Group-9

bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

biobloom

Bloom filter for bioinformatics

bioconda-recipes

Conda recipes for the bioconda channel.

cjustin.utils

Package containing a personal set of function for R.

compact_vector

Bit packed vector of integral values

FastqMultiThreadProducerConsumer

Example program for efficient multithread producer-consumer I/O with kseq

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers

homebrew-science

:microscope: Scientific formulae for the Homebrew package manager

PackedArray

Random access array of tightly packed unsigned integers

PGRT

post_alea

post alea analysis pipeline for allele specific genes and transposible elements

r_utils

Set of personal use utility functions for R bundled into a package

SaveOurShip2Experimental

Experimental branch of Save Our Ship 2

sdust

Symmetric DUST for finding low-complexity regions in DNA sequences

SeqGroupClassifier

seqtk

Toolkit for processing sequences in FASTA/Q formats

serratus

Ultra-deep Coronavirus Homology Search

spaced-seeds

Scripts to empirically show how spaced seed entropy is related to their sensitivity for homology search.

stat540-2014-chu-justin

stat540-2014-chu-justin-hw

STAT545A