JustasB

linetimer

A small Python class to measure the time taken by indented lines

BlenderNEURON

Exports 3D structure and activity from NEURON simulator to Blender

hoc2swc

Converter for NEURON simulator HOC files to SWC

SwarmSight

SwarmSight is a published video analysis tool with modules to a) to track insect antenna and proboscis movements and b) assess the aggregate movement or activity levels of groups or swarms of animals. Developed at Arizona State University, it is used by behavioral scientists to study the behavior of insects, birds, fish, and other animals.

OlfactoryBulb

Biophysically Realistic Model of the Olfactory Bulb Mitral-Tufted-Granule Cell Pathway

LFPsimpy

Zero-model-modification, MPI-compatible Python package to compute extracellular Local Field Potentials (LFPs) for NEURON simulator models

pylmeasure

Python wrapper for L-measure

latest_blender_url

Retrieves the latest Blender download URL, for use in e.g. Travis CI

adahessian

ADAHESSIAN: An Adaptive Second Order Optimizer for Machine Learning

blender

clone of git://git.blender.org/blender.git + my branches

brian2genn

Brian 2 frontend to the GeNN simulator

Chart.js

Simple HTML5 Charts using the <canvas> tag

Cvapp-NeuroMorpho.org

Version of Cvapp as used on NeuroMorpho.org. Based on Robert Cannon's initial implementation.

DataScience

Data Science Project Showcase

DockerImages

Stores Dockerfiles for software maintained by IFCAR

feast

Feature Store for Machine Learning

gpt-neox

An implementation of model parallel autoregressive transformers on GPUs, based on the DeepSpeed library.

jNeuroML

A single package (command line tool and library) in Java to validate, simulate, translate and analyse NeuroML 2 models

label-studio

Label Studio is a multi-type data labeling and annotation tool with standardized output format

ml-performance-monitoring

A Python package for sending model inference data, data metrics, and model metrics

neuroinf-archive

Archived version of Neuroinf.org

NeuroML2

This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.

NeuroMLWebsite

The latest version of the NeuroML website

neuron-docker

NEURON simulator Docker images

neuronunit

A package for data-driven validation of neuron and ion channel models using SciUnit

openai_tools

Growing set of scripts to explore pdf publication using ChatGPT API

pytorch-grad-cam

Advanced AI Explainability for computer vision. Support for CNNs, Vision Transformers, Classification, Object detection, Segmentation, Image similarity and more.

skorch

A scikit-learn compatible neural network library that wraps PyTorch

so-tech-tracker

sphinx_rtd_theme

Sphinx theme for readthedocs.org