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JuliaInterop / Cxx.jl

The Julia C++ Interface

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Fails to precompile on macOS Catalina

Nate711 opened this issue · comments

commented 
julia> using Cxx
[ Info: Precompiling Cxx [a0b5b9ef-44b7-5148-a2d1-f6db19f3c3d2]
ERROR: LoadError: LoadError: "/usr/include" is missing, please install those headers by running `sudo installer -pkg /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg -target /`
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] collectStdHeaders!(::Array{Tuple{String,Int32},1}) at /Users/nathan/.julia/packages/Cxx/vxYtJ/src/initialization.jl:231
 [3] collectAllHeaders! at /Users/nathan/.julia/packages/Cxx/vxYtJ/src/initialization.jl:386 [inlined]
 [4] collectAllHeaders(::Bool) at /Users/nathan/.julia/packages/Cxx/vxYtJ/src/initialization.jl:390
 [5] top-level scope at /Users/nathan/.julia/packages/Cxx/vxYtJ/src/initialization.jl:420
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1094
 [8] include at ./Base.jl:31 [inlined]
 [9] include(::String) at /Users/nathan/.julia/packages/Cxx/vxYtJ/src/Cxx.jl:144
 [10] top-level scope at /Users/nathan/.julia/packages/Cxx/vxYtJ/src/Cxx.jl:170
 [11] include at ./boot.jl:328 [inlined]
 [12] include_relative(::Module, ::String) at ./loading.jl:1094
 [13] include(::Module, ::String) at ./Base.jl:31
 [14] top-level scope at none:2
 [15] eval at ./boot.jl:330 [inlined]
 [16] eval(::Expr) at ./client.jl:432
 [17] top-level scope at ./none:3
in expression starting at /Users/nathan/.julia/packages/Cxx/vxYtJ/src/initialization.jl:420
in expression starting at /Users/nathan/.julia/packages/Cxx/vxYtJ/src/Cxx.jl:170
ERROR: Failed to precompile Cxx [a0b5b9ef-44b7-5148-a2d1-f6db19f3c3d2] to /Users/nathan/.julia/compiled/v1.2/Cxx/ESGkI.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1253
 [3] _require(::Base.PkgId) at ./loading.jl:1013
 [4] require(::Base.PkgId) at ./loading.jl:911
 [5] require(::Module, ::Symbol) at ./loading.jl:906
commented

Should be fixed on master, see #428.

commented 
julia> Pkg.add(PackageSpec(url="https://github.com/JuliaInterop/Cxx.jl"))
   Cloning git-repo `https://github.com/JuliaInterop/Cxx.jl`
  Updating git-repo `https://github.com/JuliaInterop/Cxx.jl`
  Updating git-repo `https://github.com/JuliaInterop/Cxx.jl`
 Resolving package versions...
  Updating `~/.julia/environments/v1.2/Project.toml`
  [a0b5b9ef] + Cxx v0.3.2 #master (https://github.com/JuliaInterop/Cxx.jl)
  Updating `~/.julia/environments/v1.2/Manifest.toml`
  [a0b5b9ef] + Cxx v0.3.2 #master (https://github.com/JuliaInterop/Cxx.jl)
  Building Cxx → `~/.julia/packages/Cxx/c7DTV/deps/build.log`

julia> using Cxx
[ Info: Precompiling Cxx [a0b5b9ef-44b7-5148-a2d1-f6db19f3c3d2]
WARNING: Could not add directory /Applications/Xcode.app/Contents/Developer/SDKs/MacOSX.sdk/usr/include to clang search path!
In file included from /Cxx.h:1:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/boot.h:16:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/cstring:61:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/string.h:61:15: fatal error: 'string.h' file not found
#include_next <string.h>
              ^~~~~~~~~~
In file included from /Cxx.h:1:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/replpane.jl:83:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Parse/Parser.h:17:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/AST/Availability.h:17:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Basic/SourceLocation.h:18:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Basic/LLVM.h:22:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/build/clang-6.0.1/include/llvm/Support/Casting.h:19:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/build/clang-6.0.1/include/llvm/Support/type_traits.h:19:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/utility:200:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:80:44: error: base specifier must name a class
template <class _Tp> struct __tuple_like : false_type {};
                                           ^~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:165:63: error: base specifier must name a class
template <class... _Tp> struct __tuple_like<tuple<_Tp...> > : true_type {};
                                                              ^~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:197:72: error: base specifier must name a class
template <class _T1, class _T2> struct __tuple_like<pair<_T1, _T2> > : true_type {};
                                                                       ^~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:225:78: error: base specifier must name a class
template <class _Tp, size_t _Size> struct __tuple_like<array<_Tp, _Size> > : true_type {};
                                                                             ^~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:299:71: error: base specifier must name a class
template <class... _Tp> struct __tuple_like<__tuple_types<_Tp...> > : true_type {};
                                                                      ^~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:418:14: error: base specifier must name a class
    : public false_type {};
      ~~~~~~~^~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:433:14: error: base specifier must name a class
    : public false_type {};
      ~~~~~~~^~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:448:14: error: base specifier must name a class
    : public false_type {};
      ~~~~~~~^~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__tuple:472:37: error: base specifier must name a class
struct __tuple_like_with_size_imp : false_type {};
                                    ^~~~~~~~~~
In file included from /Cxx.h:1:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/replpane.jl:83:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Parse/Parser.h:17:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/AST/Availability.h:17:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Basic/SourceLocation.h:18:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Basic/LLVM.h:22:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/build/clang-6.0.1/include/llvm/Support/Casting.h:19:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/build/clang-6.0.1/include/llvm/Support/type_traits.h:19:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/utility:271:1: error: redefinition of 'swap' as different kind of symbol
swap(_Tp (&__a)[_Np], _Tp (&__b)[_Np]) _NOEXCEPT_(__is_nothrow_swappable<_Tp>::value)
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/type_traits:4536:1: note: previous definition is here
swap(_Tp (&__a)[_Np], _Tp (&__b)[_Np]) _NOEXCEPT_(__is_nothrow_swappable<_Tp>::value);
^
In file included from /Cxx.h:1:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/replpane.jl:83:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Parse/Parser.h:17:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/AST/Availability.h:17:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Basic/SourceLocation.h:18:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Basic/LLVM.h:22:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/build/clang-6.0.1/include/llvm/Support/Casting.h:19:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/build/clang-6.0.1/include/llvm/Support/type_traits.h:19:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/utility:979:10: error: no member named 'memcpy' in namespace 'std'; did you mean 'memchr'?
    std::memcpy(&__r, __p, sizeof(__r));
    ~~~~~^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/cstring:81:9: note: 'memchr' declared here
using ::memchr;
        ^
In file included from /Cxx.h:1:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/replpane.jl:83:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Parse/Parser.h:17:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/AST/Availability.h:17:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Basic/SourceLocation.h:18:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/src/clang-6.0.1/include/clang/Basic/LLVM.h:22:
In file included from /Users/nathan/.julia/packages/Cxx/c7DTV/src/CxxREPL/../../deps/usr/build/clang-6.0.1/include/llvm/Support/Casting.h:20:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/cassert:21:10: fatal error: 'assert.h' file not found
#include <assert.h>
         ^~~~~~~~~~
WARNING: Could not add directory /Applications/Xcode.app/Contents/Developer/SDKs/MacOSX.sdk/usr/include to clang search path!
commented

Could you give it a check that /Applications/Xcode.app/Contents/Developer/SDKs/MacOSX.sdk/usr/include is a valid path on your machine? If not, try searching usr/include under /Applications/Xcode.app/Contents/Developer/.

commented

looks like Apple changed the path again:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk
https://superuser.com/questions/1488979/macos-catalina-cannot-find-usr-include-file