Jujiao Kang's repositories
1kg
🗺️Download and process 1000 Genomes genotype for ancestry-specific LD reference panel
AMM21
Command-line tool to run Abstract Mediation Model (Weiner et al 2022, AJHG)
awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
bids-examples
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
CELLECT
CELLECT (CELL-type Expression-specific integration for Complex Traits)
CNV-convergence
Codes for CNV convergence paper NHB
coloc
Repo for the R package coloc
DPW_WES
Code for WES
ENIGMA-CNV
This repository contains protocols for the ENIGMA-CNV working group.
FUMA-webapp
Source code of FUMA GWAS web application
fusion_twas
methods for functional summary-based imputation
gatk
Official code repository for GATK versions 4 and up
GWASTutorial
GWAS Tutorial for Beginners
hansen_receptors
Data and code supporting Hansen et al., 2022 "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"
Lifespan
Code used in the lifespan brainchart project
MetaXcan
MetaXcan software and manuscript
netneurotools
Useful tools from the Network Neuroscience Lab
ohbm2020-posters
Centralized registry of Jitsi rooms and pdfs for OHBM 2020 posters.
PrediXcan
PrediXcan Project
psychimmgen2021
https://www.nature.com/articles/s41467-022-33885-7#Sec9
SAIGE
Development for SAIGE and SAIGE-GENE(+)
scDRS
Single-cell disease relevance score (scDRS)
ukbb_pan_ancestry
Analyses conducting GWAS across the UKBB diverse superpopulations
visium_heart
Spatial transcriptomics of heart tissue