MedAGI: Unify Domain-specific Medical LLMs with the Lowest Cost

Juexiao Zhou#, Xiuying Chen#, Xin Gao. #Equal Contribution

King Abdullah University of Science and Technology, KAUST

Installation

conda env create -f environment.yml
conda activate medagi

Preparation of Domain-specific Alignment layers

To train your domain-specific layer, please follow the steps at https://github.com/Vision-CAIR/MiniGPT-4

First, set the path to vicuna in medagi/configs/models/medagi.yaml

Then set the model path (ckpt_list) and model description (model_description_list) in eval_configs/medagi_eval.yaml for each of your domain-specific alignment layers, for example

  ckpt_list: ['MedAGI/weights/skingpt_v4.2.pth',
              'MedAGI/weights/xray.pth',
              'MedAGI/weights/pathology.pth',
  ]

  model_description_list: [
    'SkinGPT is a revolutionary dermatology diagnostic system that utilizes an advanced vision-based large language model to assess skin conditions. By uploading personal skin photos to the system, users receive an autonomous analysis that can identify and categorize various skin conditions, and provide treatment recommendations.',
    'XrayChat is a cutting-edge system that enables interactive, multi-turn conversations about chest X-ray images. Users simply upload a chest X-ray image, ask any question about it, and XrayChat generates informed responses. The system utilizes an X-ray encoder, a large language model, and an adaptor to comprehend the X-ray image and produce accurate and helpful answers.',
    'PathologyChat is a cutting-edge system that enables interactive, multi-round conversations about stained pathology images. Users simply upload a pathology, ask any question about it, and PathologyChat generates informed responses.'
  ]

Now, you are ready to go!

MedAGI will pick up the most suitable domain-specific alignment layer for you according to your inputs.

Launching Demo Locally

python demo.py --cfg-path eval_configs/medagi_eval.yaml  --gpu-id 0

To Contribute

We are open to accepting more domain-specific alignment layers! Please PR to add your domain-specific alignment layer and description in eval_configs/medagi_eval.yaml and place your model under ./weights.

Acknowledgement

MiniGPT-4 This repo is based on MiniGPT-4, an awesome repo for vision-language chatbot!
Lavis
Vicuna

Citation

If you're using MedAGI in your research or applications, please cite MedAGI using this BibTeX:

@misc{zhou2023path,
      title={Path to Medical AGI: Unify Domain-specific Medical LLMs with the Lowest Cost}, 
      author={Juexiao Zhou and Xiuying Chen and Xin Gao},
      year={2023},
      eprint={2306.10765},
      archivePrefix={arXiv},
      primaryClass={cs.AI}
}

JoshuaChou2018 / MedAGI