Jordan Sorokin (Jorsorokin)

Jorsorokin

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Company:@recursionpharma

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Jordan Sorokin's repositories

HDBSCAN

Hierarchical density based clustering for applications with noise

ChaosAnalysis

A matlab package for analyzing chaotic properties of time series data

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SingularSpectrum

A MATLAB class for performing and visualizing singular-spectrum analysis (SSA), a non-parametric spectral decomposition technique for time series

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Data_visualization

various functions for data visulization (mostly centered around neuroscience)

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extracellular_spiking_simulation

MATLAB code for simulating extracellular multi-electrode recordings of neural action potentials and local field potential

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hlab-analysis-methods

Code, slides, and figs on various analysis techniques

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JStorch

repository for abstracting details away from pytorch API for a simpler interface to set up NNs

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ModelNeuro

Simulation of HH-type neurons

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neo-matlab

A MATLAB-version of NEO - a python package for organizing large datasets of multi-channel extracellular recordings.

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neurite_analysis

MATLAB code for the filtering, detection, and feature extraction of neurites in 2D images

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PulsePal

Open source pulse train generator

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baselines

OpenAI Baselines: high-quality implementations of reinforcement learning algorithms

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bibliography

bibtex files

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BioQC

Detect tissue heterogeneity in gene expression data with BioQC

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dit

Python package for information theory.

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garage

A toolkit for reproducible reinforcement learning research

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GSEApy

Gene Set Enrichment Analysis in Python

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JAGA_software

code for capturing and displaying JAGA wireless neural recordings. The code here is based on open-source software courteously provided by the engineers at JAGA Inc. (https://www.jinga-hi.com)

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powerlevel10k

A Zsh theme

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pyarchical

hierarchical regression models in python

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pyshuffle

A series of modules for shuffling procedures and statistical tests

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pytorch-esn

An Echo State Network module for PyTorch.

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quick-portfolio

Use this template if you need a quick developer / data science portfolio! Based on a Minimal Jekyll theme for GitHub Pages.

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reinforcement-learning

Implementation of Reinforcement Learning Algorithms. Python, OpenAI Gym, Tensorflow. Exercises and Solutions to accompany Sutton's Book and David Silver's course.

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SWDetector

MATLAB code for SWD classification (absence seizures) in EEG; comes with both general purpose code for building a logistic-regression classifier using wavelet-derived features, and a pre-built model for detecting SWDs in EEG data

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Time-series-classification-and-clustering-with-Reservoir-Computing

Library for implementing reservoir computing models (echo state networks) for multivariate time series classification and clustering.

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ZIFA

Zero-inflated dimensionality reduction algorithm for single-cell data

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