Jordy's repositories
easyseq_covid19
Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Genome Sequencing kit.
18S-CYP51A_RC-PCR
Measure amplicon RC-PCR depth
BasicPhylo
Is a tool to place WGS data of a Mycobacteria sample into a general Mycobacteria phylogeny.
MyCodentifier
Nextflow pipeline to identify TB and NTM species from NGS data.
r-build-package
To update install and build R packages
RC-PCR_CLASSIFIER
Reverse Complement PCR (RC-PCR_ Classification pipeline.
SIGBIO-proficiencytest
this repo contains all template sheets that were used in the proficiency test for WGS outbreaks
webIlluminaNormalization
Pipeline and Web-Interface for Illumina normalization