Jordy (JordyCoolen)

JordyCoolen

Geek Repo

Company:RadboudUMC

Location:Nijmegen, The Netherlands

Twitter:@CoolenJordy

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Jordy's repositories

easyseq_covid19

Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Genome Sequencing kit.

16S_rcPCR

Not working repository

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18S-CYP51A_RC-PCR

Measure amplicon RC-PCR depth

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BasicPhylo

Is a tool to place WGS data of a Mycobacteria sample into a general Mycobacteria phylogeny.

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Binning

Use for bayesian integration studies. To optimize integration with use of continuous data measurements of each dataset needs to be grouped in bins based on their value compared to the positive predictive geneset and/or the negative predictive geneset

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hombaampC

Homoplasy-based analysis on FOX resistant ESBL negative Escherichia coli.

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home

Github pages

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MyCodentifier

Nextflow pipeline to identify TB and NTM species from NGS data.

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r-build-package

To update install and build R packages

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R2GSCF

R client to connect to GSCF

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RC-PCR_CLASSIFIER

Reverse Complement PCR (RC-PCR_ Classification pipeline.

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SIGBIO-proficiencytest

this repo contains all template sheets that were used in the proficiency test for WGS outbreaks

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webIlluminaNormalization

Pipeline and Web-Interface for Illumina normalization

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