Jon Eilers's repositories
analyticalgenomics
A Jekyll version of the "Forty" theme by HTML5 UP.
bitacora
BITACORA: A Bioinformatics tool for gene family annotation
bitacora_error
output folder for mdYUCCA bitacora run
CRISPR-SSWD
Looking at CRISPR sequences in Metagenomic Datasets of Sea Stars affected by Sea Star Wasting Disease and Healthy Individuals
EndHiC
EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds.
genomics
Template for the Read the Docs tutorial
jekyll-jupyter-notebook
Jekyll Jupyter Notebook plugin
jplace_read_analysis
Scripts to calculate read placement summary statistics
junkcode-for-jplace-analysis
Scripts for parsing and analyzing jplace files
klab_pipeline-1
Combination of the good parts of DAP and package_compare
landed-theme-jekyll
A Jekyll port of the Landed theme from html5up.net
minimal-mistakes
:triangular_ruler: A flexible two-column Jekyll theme perfect for building personal sites, blogs, and portfolios.
sea_cucumber_genomics
Minimal Mistakes GitHub Pages site starter
The_Project
Bio-497 environmental genomics class project: Shelby and Jon
thesis
markdown files containing commands used to run various programs