Johnny Chen's repositories
3d-dna_pipeline_for_4_enzyme_arima
Adapted 3d-dna pipeline for 4 enzyme cocktail arima Hi-C toolkit
hicexplorer_scripts
The hicexplorer scripts I used
autoBSgenome
A python warp of BSgenome. Build BSgenome just like fill in a questionnaire!
bioconda-recipes
Conda recipes for the bioconda channel.
biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
bioinfo_scripts
A collection for my daily bioinformatics scripts.
ChatGPT-Next-Web
深度适配API2D的ChatGPT-Next-Web，已经实现了双APIKey的代理切换
chathub
All-in-one chatbot client
codeinterpreter-api
Open source implementation of the ChatGPT Code Interpreter 👾
Cogent
Coding Genome Reconstruction using Iso-Seq data
DeeReCT-TSS_release
This repository contains the implementation of DeeReCT-TSS
GenomeSyn
We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and structural variation and its visualization tools.
hds5210-2022
Main class repository for HDS5210-2022
gpt-code-ui
An open source implementation of OpenAI's ChatGPT Code interpreter
gpt_academic
为ChatGPT/GLM提供实用化交互界面，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm2等本地模型。兼容文心一言, moss, llama2, rwkv, claude2, 通义千问, 书生, 讯飞星火等。
hic-scaffolding-nf
Nextflow pipeline for scaffolding genome assemblies with Hi-C reads
joyful-pandas
pandas中文教程
juicebox_scripts
A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
phylotree.js
Interactive viewer of phylogenetic trees
RMRB
This is an archive version of old RepBase library (v20170127) for RepeatMasker.
STRIPE_seq_pipeline_for_polyploidy
A test pipeline. Use it on your own risk!
tiny_python_projects
Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.
TSSHub
TSSHub: A Comprehensive Database of Transcription Start Sites (TSS) across Eukaryotes
TSSr_dev
New version of TSSr
tsstk
An open source toolkit for TSS(transcription start site) analysis