Yue Wang's repositories
awesome
collection of awesome lists
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
content
Experimental repo of bio.tools content for augmentation with other sources of tool information
dandelion
dandelion - A single cell BCR-seq analysis package for 10X Chromium 5' data
dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
DL-Anti-Osteoporosis
Deep learning enables discovery of highly potent anti-osteoporosis natural products
DLEPS
A Deep Learning based Efficacy Prediction System for drug discovery
EndoscopyDepthEstimation-Pytorch
Pytorch implementation of paper named "Dense Depth Estimation in Monocular Endoscopy with Self-supervised Learning Methods" (TMI)
graph-learn
graph-learn
graph_nets
Build Graph Nets in Tensorflow
MDNNMD
An implementation of multimodal deep neural network, a new model for human breast cancer prognosis prediction.
MultiMAP
MultiMAP for integration of single cell multi-omics
PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
python_biologist
Python Programming for Biologists
pytorch_geometric
Geometric Deep Learning Extension Library for PyTorch
scGAN
Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks
scGNN
scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
Science_GutAtlas
This is repository for data preprocessing and analysis of the human gut single-cell data performed by me and under review in Science.
scRNAGAN
Training Generative Adversarial Network models for scRNA-seq datasets
tf-gnn-samples
TensorFlow implementations of Graph Neural Networks
tiramisu
Keras implementation of The One Hundred Layers Tiramisu: Fully Convolutional DenseNets for Semantic Segmentation
training-material
A collection of Galaxy-related training material