JohnReid

DeLorean

R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experiments.

HAIS

Hamiltonian Annealed Importance Sampling (HAIS) in tensorflow

JohnReid.github.io

John Reid's academic website

dotfiles

My configuration files (.tmux.conf, .vimrc, .bashrc, .gitconfig, etc)

PythonPackageTemplate

Template boilerplate code for how I like to set my python packages up

Barlow-Twins-HSIC

Barlow Twins HSIC

bayesfunc

BayesOptJournalClub

Code for a London Data Science Journal Club about Bayesian optimisation

check-yourself

A case study in discrete choice model assessment with predictive simulations.

clean-markdown-theme

A clean css theme to be used with markdown files.

CRF_denoising

Build a CRF model using Chainer for binary image denoising.

dynlearn

Active learning of dynamical systems

genbmm

CUDA kernels for generalized matrix-multiplication in PyTorch

kfda

Kernel Fisher Discriminant Analysis implementation following https://arxiv.org/abs/1906.09436

lc0

The rewritten engine, originally for tensorflow. Now all other backends have been ported here.

model-complexity

Analyse complexity of kNN regressors

neoterm

Wrapper of some vim/neovim's :terminal functions.

nolina

Randomised linear algebra

notes

Course notes

nvim-ipy

IPython/Jupyter plugin for Neovim

pls-tf

Partial least squares in TensorFlow

pytorch-struct

Fast, general, and tested differentiable structured prediction in PyTorch

scikit-kda

Scikit-learn-compatible Kernel Discriminant Analysis

scripts

Handy scripts

Spectral-Graph-Analysis

Explore how spectral graph analysis behaves a little

StanODEs

Code for Stan ODE hands-on estimating ODEs tutorial given by Daniel Lee

TableBank

tf_ner

Simple and Efficient Tensorflow implementations of NER models with tf.estimator and tf.data

vim-ripple

Minimalist plugin to interact with a REPL

vim-shebang

Vim filetype detection by the she·bang line at file.