JohannesNE / rsleep

Sleep Data Analysis with R

rsleep: A R package for sleep data analysis

rsleep is a R package providing tools for sleep data management, visualization and analysis.

Installation

Stable version can be downloaded and installed from CRAN [1] :

install.packages("rsleep", repos = "https://cloud.r-project.org")

Development version can be directly installed from Github using the devtools package :

devtools::install_github("boupetch/rsleep")

Usage

library(rsleep)

Vignettes

• Managing Sleep Records Files
• Spectral analysis of sleep electroencephalography signals
• Automatic Stages Classification

Examples

Docker

The rsleep package can be used through Docker, with the automatic build from Dockerhub or by building the image using the provided Dockerfile.

Example

Automatic sleep stages scoring using rsleep Docker image:

wget -O 15012016HD.edf https://osf.io/57j2u/download 

docker run --rm  -v $(pwd):/shared boupetch/rsleep R -e "write.csv(rsleep::score_stages_edf('/shared/15012016HD.edf'),'/shared/hypnodensity.csv')"

References

[1] K. Hornik, The comprehensive r archive network, Wiley Interdisciplinary Reviews: Computational Statistics. 4 (2012) 394–398. https://cran.r-project.org/.