Joeycho

segment-anything-2

The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

connected-components-3d

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

surface-distance

Library to compute surface distance based performance metrics for segmentation tasks.

Journal-Club

The RISE Journal Club aims to create a friendly environment to discuss the latest state-of-the-art papers in the areas of medical image analysis, AI and computer vision. The moderators will briefly introduce the paper and then moderate a discussion where everyone is welcome to provide their thoughts and ask any questions on the paper.

SAM4MIS

SAM & SAM 2 for for Medical Image Segmentation: Open-Source Project Summary

TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

awesome-semantic-segmentation

:metal: awesome-semantic-segmentation

info-nce-pytorch

PyTorch implementation of the InfoNCE loss for self-supervised learning.

torchmetrics

Torchmetrics - Machine learning metrics for distributed, scalable PyTorch applications.

pytorch-msssim

Fast and differentiable MS-SSIM and SSIM for pytorch.

pytorch-lightning

Pretrain, finetune and deploy AI models on multiple GPUs, TPUs with zero code changes.

ml-glossary

Machine learning glossary

medpy

Medical image processing in Python

roughness-index-distance

Roughness Index and Roughness Distance for Benchmarking Medical Segmentation

torchio

Medical imaging toolkit for deep learning

ModelsGenesis

[MICCAI 2019] [MEDIA 2020] Models Genesis

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

ZS3

Zero-Shot Semantic Segmentation

OLVA

awesome-gan-for-medical-imaging

Awesome GAN for Medical Imaging

ConvNeXt

Code release for ConvNeXt model

IRTK

The Image Registration Toolkit

multitask_seg_placenta

segmentation_models.pytorch

Semantic segmentation models with 500+ pretrained convolutional and transformer-based backbones.

react-planner

:pencil2: A React Component for plans design. Draw a 2D floorplan and navigate it in 3D mode.

pytorch-image-models

The largest collection of PyTorch image encoders / backbones. Including train, eval, inference, export scripts, and pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (ViT), MobileNetV4, MobileNet-V3 & V2, RegNet, DPN, CSPNet, Swin Transformer, MaxViT, CoAtNet, ConvNeXt, and more

penrose

Create beautiful diagrams just by typing notation in plain text.

php-d3-lib

Library for implementing d3.js functionality via PHP class

raytracing.github.io

Main Web Site (Online Books)

Moon

🌓 Moon is a minimal, one column jekyll theme.