Jinmiao Chen's Lab's repositories
Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
Rphenograph
Rphenograph: R implementation of the PhenoGraph algorithm
FastIntegration
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
DISCOtoolkit_py
Python version of DISCO toolkit
ezSingleCell
GUI implementation for Seurat using shiny
DISCO_learning
Tell you how to use DISCO effectively
SpatialGlue
SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
heart_aging
The codes for the manuscript about heart aging
pyGAT
Pytorch implementation of the Graph Attention Network model by Veličković et. al (2017, https://arxiv.org/abs/1710.10903)
SpatialGlue_3M
Extended version of SpatialGlue for integration of spatial triplet modality data.
SpatialGlue_tutorials
The tutorial is to show how to apply SpatialGlue to integrate spatial multi-omics data to decipher tissue heterogeneity.