Jingmingxia's repositories
Perl-Scripts
This script aimed at calculating the numbers of reads that >100k,100k-80k,80k-60k,<60k and extract their corresponding sequences.
bedtools2
A powerful toolset for genome arithmetic.
Extract-different-seq
Extract the different seq from the aligned seq
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
FastqStats
Python file to read in a fastq file at the command line and output stats about the data
Filter-specified-length-of-fa
The script is to filter the specified length reads of fasta file
Flye
Fast and accurate de novo assembler for single molecule sequencing reads
Gc-n50-and-length-stat
The script is to stat GC, N50 and length of the genome file
pan-genome-visualization
Visualization of the pan-genome output by panX
Prodigal
Prodigal Gene Prediction Software
pySeqkit
Toolkit for processing sequences in FASTA/Q formats
python3-cookbook
《Python Cookbook》 3rd Edition Translation
Python_scripts
python scripts to calculate and visualize the Nanopore seq
Specifications
GFF and GVF specification documents
tutorials
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!