Jin's repositories
EvolDynamics1
A 4-compartment (which can be egeneralized to higher compartments) was studied to understand the phenotypic heterogeneity in modeling cancer evolution.
clonal_evolution
code associated with thesis chapters for clonal evolution
CancerEcologyPaperScripts
jupyter python scripts for treatment options and success rates for cancer and rat eradication
qsp-modeling-with-python
Python codes to facilitate quantitative system pharmacology (QSP) modeling
Breast-Cancer-Scikitlearn
simple tutorial on Machine Learning with Scikitlearn
bad-data-guide
An exhaustive reference to problems seen in real-world data along with suggestions on how to resolve them.
Tutorial_Agent_Based_Models
A Tutorial for Agent Based Models in Python
Systems_Biology_FBA_tutorial
Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam
Breast-Cancer-Detection-using-Deep-Learning
Experiments to show the usage of deep learning to detect breast cancer from breast histopathology images
CancerTypePrediction
This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".
Data-Visualization
R Markdown code for visualizing raw and summarized data + regression models
Modeling-Tutorial
Matlab/Simulink Code for my book "Tutorial for Modeling and Simulation of Biological Processes"
cultural_evolution_ABM_tutorial
This tutorial shows how to create very simple simulation or agent-based models of cultural evolution in R
Bayesian-Analysis-with-Python
Bayesian Analysis with Python by Packt
tensorflow-tutorial
A tutorial on breast cancer cell classification using deep learning in Tensorflow
prog4comp
Resources for the book "Programming for Computations" by S. Linge and H. P. Langtangen
Simulation-and-modelling-of-natural-processes
This repository contains graded assignments in python-3 language of the course 'Simulation and modelling of natural processes' by University of Geneva offered by Coursera.
CPT_QSPtutorial
Supplementary material for CPT tutorial on logic modeling for quantitative systems pharmacology
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
Evolutionary-triage-in-Cancer
Evolutionary triage in Cancer: Drivers, Passengers, and “Never” Mutations