JhuangLab

JhuangLab's repositories

BioInstaller

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

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CytoTree

A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data

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ngstk

A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.

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iseq

An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data

Language:PythonApache-2.015 20

EWASpaper

Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

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healthman

code for "A comparative cohort study of post-COVID-19 conditions based on 23,838 individuals’ physical examination records in China"

Language:Jupyter NotebookApache-2.0100

BioInstaller-docker-repo

Docker image repo

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configr

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CytoTree-dataset

Datasets and code for CytoTree

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ewas

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flowSpy-dataset

Dataset of flowSpy

Language:HTMLGPL-3.002 1

GSEA-MSigDB

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hyperion

A Toolkit for Imaging Mass Cytometry™ (IMC™) with the Hyperion™ Imaging System Data

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IMCpaper

A clinically relevant spatial single-cell landscape of pancreatic cancer

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qap

quasispecies analysis package

Language:RoffGPL-3.0030

delfi_scripts

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gvmap

Language:RMIT030

imctoolkits

A Toolkit for Imaging Mass Cytometry™ (IMC™) with the Hyperion™ Imaging System Data

Language:R020