JetBrains-Research / chipseq-smk-pipeline

ChIP-Seq processing pipeline on snakemake

JetBrains-Research/chipseq-smk-pipeline Issues

Pipeline fails with _1 suffix in file name without corresponding _2 file
Updated 4 years ago
Use Epic instead of SICER
Updated 5 years ago
Support input processing
Closed 5 years ago1
Allow to run pipeline from workdir (with -s param) and not only from src dir
Updated 5 years ago5
Check that raw data are available on start and warn user if not reads were found
Updated 5 years ago5
Bowtie fails
Closed 5 years ago4