JensWendt

BaSiCPy

guide-KVpairs-scripts

An OMERO guide to explain how to use the Key-Value pair scripts

napari-omero

Browse your OMERO database from within napari.

stackview

Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets

omero-scripts

ChaosRecipeEnhancer

🟡📈 Streamline your Chaos Recipe gains!

LabelsToROIs

A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification

omero-cli-transfer

An OMERO CLI plugin for creating transfer packets between OMERO servers.

ezomero

A module with convenience functions for writing Python code that interacts with OMERO.

omero_macro-extensions

omero_batch-plugin

CellProfiler

An open-source application for biological image analysis

ijl-utilities-wrappers

Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)

parade-crossfilter

Prototype OMERO.parade implementation using crossfilter.js

RDM4mic

RDM4mic working group - research data management for microscopy data

omero-guide-fiji

raw2ometiff

Raw format to OME-TIFF converter

bioformats2raw

Bio-Formats image file format to raw format converter

PathOfBuilding

Offline build planner for Path of Exile.