Jean-Baptiste Lamouche's repositories
AnnotSV
Annotation and Ranking of Structural Variation
Language:TclGPL-3.0000
howard
HOWARD annotates (using ANNOVAR and snpEff) and prioritizes (rules to Flag and Score) genetic variations, calculates and normalizes annotations, translates and export VCF format (into VCF or TSV) and generates variants statistics (bcftools and snpEff)
Language:PerlAGPL-3.0000
IonNIPT
ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction
Language:PythonGPL-3.0000
PyVCF3
A Variant Call Format reader for Python.
Language:PythonNOASSERTION000
SpliceAI
A deep learning-based tool to identify splice variants
Language:PythonNOASSERTION000
VaRank_fix
Annotation and ranking of SNV / indels
Language:TclGPL-3.0000
Language:PythonAGPL-3.0000
VariantScreening
Explore VCF files and more
Language:JavaScript000
vcf2circos
python plotly Circos from VCF
Language:PythonAGPL-3.0000