Jasonxu's repositories
PlantPhoneDB
A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication
MangroveDB
A comprehensive online database for mangrove plants based on multi-omics datasets
lncQTL-XMBD
To reveal the eQTLs landscape of lncRNA expression in cancer (using shiny)
miQTL
MiR-3130-5p Is an Intermediate modulator of 2q33 and Influences the Invasiveness of Lung Adenocarcinoma by Targeting NDUFS1
PlantC2U
Deep learning of cross-species sequence landscapes predicts chloroplast C-to-U RNA editing in plants.
PlantCAPE
PlantCAPE systematically estimates the key regions of promoters to robustly create quantitative trait variation in plants.
PlantCdMiner
PlantCdMiner, a web service to predict transcriptional responses to cadmium stress in plants
scCRE
scCRE: An R package to predict stress-responsive gene using the cis-regulatory code at single-cell level
scPlantRE
Exploring the cellular landscape of RNA editing from scRNA-seq data in plants