Jappy0

NBCLDA

A Novel Probability Model for LncRNA–Disease Association Prediction Based on the Naïve Bayesian Classifier

microbe-drug-disease

Predicting pairwise relationships between human microbes, drugs and diseases

noise2read

AAva-20-21-P2

Second Project of our Advanced Algorithms course, on the Common Substrings of More Than Two Strings problem

bioconda-recipes

Conda recipes for the bioconda channel.

biotite

A comprehensive library for computational molecular biology

ccs

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

CoLoRd

A versatile compressor of third generation sequencing reads.

Deduplication_ErrorCorrection

How error correction affects PCR deduplication: a survey based on UMI datasets of short reads

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

DPKL

Code accompanying the UAI 2021 paper 'Deep Kernels with Probabilistic Embeddings for Small-Data Learning'

fastDNA

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Jappy

Jappy Ping

MathFeature

Feature Extraction Package for Biological Sequences

miREC

An error correction tool for miRNA reads at single-base resolution

pbbam

PacBio BAM C++ library

PublicTwinNeuralNetworkRegression

reads2graph

Edit-distance-based read graph construction from short reads

readSimulator

Simulating paired-end short sequencing reads from circular and linear genomes

seqgendiff

Sequence Generation for Differential Expression Analysis and Beyond

setuptools

Official project repository for the Setuptools build system

strain_identify

repo for strain identification project

VariantWorks

Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/

XICRA

Small RNAseq pipeline for paired-end reads

deepdirect

Flnc

Jappy0

Personal repository

noise2reads

Accurate and fast error correction and deduplication on short-read sequencing data

resume