Beast code in Giters

James Pino's repositories

AutomatedRNASeqAnalysis

Language:Python1 20

beatAML_response_models

Language:Jupyter Notebook1 20

MAGINE

Mechanism of Action Generation involving Network Analysis

Language:Jupyter NotebookGPL-3.01 10

Reactome2Rules

Language:Python1 30

beatAMLpilotProteomics

Analysis of BEAT AML patient proteomics data

Language:RMIT010

booleannet

Boolean Network Modeling

Language:PythonNOASSERTION020

chipper-1

Software (with Kivy GUI) for semi-automated segmentation and analysis of birdsongs or other acoustic signals.

Language:PythonGPL-3.0010

CPB_student_papers

Language:Python040

cupSODA

cupSODA is CUDA-powered coarse-grain deterministic simulator of mass-action kinetics models

Language:CudaBSD-2-Clause020

magine_gui_app

Gui using Django for magine

Language:JavaScriptGPL-3.002 1

MEMMAL

MEMMAL: MEchanistic Modeling with MAchine Learning

Language:C++GPL-3.0000

memote_demo

Memote repo to test model deployments

Language:Python010

mpnstXenoModeling

MPNST Xenograft Modeling Framework

MIT000

mummichog

pathway and network analysis for metabolomics

Language:PythonNOASSERTION010

ParticleSwarmOptimization

Language:PythonNOASSERTION020

pebl

Python Environment for Bayesian Learning

Language:PythonNOASSERTION020

py2cytoscape

Python utilities for Cytoscape and Cytoscape.js

Language:PythonMIT020

pysb

Python framework for Systems Biology modeling

Language:PythonBSD-2-Clause020

pysb_ipython_notebook

Language:Python020

straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

Language:PythonApache-2.0000

variational-autoencoder

Variational autoencoder implemented in tensorflow and pytorch (including inverse autoregressive flow)

Language:PythonMIT010