JacobAgerbo

MSMM_2024

Musca_Gut_MGs

The housefly (Musca domestica) is a fly of the suborder Cyclorrhapha. It possibly originated in the Middle East, and spread around the world as a commensal of humans. It is the most common fly species found in houses. Here we investigate the gut microbiome of the house fly and how it helps for niche adaptation and food utilisation.

BasicUtils

Basic utility script for my general work in discovering bacteria and host-microbe interactions, using omics

BasicUtilR

Basic utility script for my general work in discovering bacteria and host-microbe interactions, using omics

Photobacterium_n_phages

Comparative Analysis of salmonid-related Photobacterium and its relation to phages

JAR.github.io

My Academic webpage

blueMAGIC

blueMAGIC: Marine Analysis for metaGenomic Identification of bioactive microbial Compounds

QuickFixR

A small shiny based R packages. The package is trying to help researchers working Omics-based data, which are not super happy about coding at all. Within this packages it is possible to get an overview of data.

ARGquaculture

Worldwide metagenomic monitoring of aquaculture-related antibiotic resistance

OmicsExplorer

Bioinformatics workflow for genomics data generation and analysis

Norwegian_wild_Salmon_2022

Here, we use state-of-the-art genome resolve metagenomics and comparative genomics to investigate the metagenome dynamics and hologenome of more than 70 adult foraging wild Atlantic salmon. We further compare the microbiotas from Atlantic salmon with gut bacteria of other fish species from Norway to elucidate environmental and host related dynamics.

Capercaillie_Metagenomics

Metagenomic analysis of western capercaillies

HF_Metabolomics

Analysis of HoloFood metabolomics dataset

Data2Result

Scripts to make results from metabarcoding data

Disease_Challenge_Rainbow_Trout

Analytical pipeline for "The combined implications of probiotics, pathogenic infections and host immunity highlight the importance of gut microbiomes in understanding disease resilience in rainbow trout (Oncorhynchus mykiss)"

Comparative_Mycoplasma

Genome-resolved metagenomics suggests a mutualistic 2 relationship between Mycoplasma and salmonid hosts

Multi_Omic_Rainbow_Trout

Intestinal multi omics unravels a differentiated metabolic landscape and loss of important gut bacteria Mycoplasma salmoninae in rainbow trout (Oncorhynchus mykiss) using non marine pre- and probiotics

Rasmussen_et_al_2020a

Scripts for analysis of Rasmussen et al. 2020a, eDNA approach for arthropod and fungi monitoring in vineyards