John's repositories
2020_scWorkshop
Code and data repository for the 2020 physalia course on single cell RNA sequencing.
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biop-bash-scripts
Bash scripts to simplify your life (let's hope so!)
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CellAnnotationTutorial
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
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hmftools
Various algorithms for analysing genomics data
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L5_VEN
This repository contains code for reproducing the analysis of snRNA-seq data from human fronto-insula
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Marsh_et-al_2022_scRNAseq_Dissociation_Artifacts
Code to reproduce analysis objects for the data contained in Marsh et al., 2022: URL TBD
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nature_bash
Example scripts demonstrating science at the command line.
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