Jack Fu's repositories
recountNNLSdata
Necessary annotation to run recountNNLS
recountNNLSpaper
Repository for code used to create analyses and figures for the recountNNLSpaper
swirl_regex
Tutorial for using regex in R, taught using the R tutorial package Swirl
ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
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ballgown_code
analysis code used in Ballgown paper
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CoNIFER
CoNIFER (Copy Number Inference From Exome Reads) can discover CNVs from exome read-depth data. See Krumm et al., 2012 (Genome Research) for more information.
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MDTSData
Repository of raw simulated data used in MDTS vignette
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recountNNLS
Tx Abundance Using recount2 Summary Measures Visa NNLS
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ukbb_pan_ancestry
Analyses conducting GWAS across the UKBB diverse superpopulations
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