JDRomano2

ASAP2

Successor to ASAP (doi:10.1186/1471-2105-9-103). A phylogenomic solution for investigating the evolutionary history of a set of (potentially related) genes.

tpot

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

tpot-nn

TPOT with a simple multilayer perceptron classifier

venomkb

VenomKB - A centralized knowledge base for computational toxinology

.emacs.d

Joe Romano's Emacs configuration

bmin5250_week13

Demo Git repository for Week 13 in BMIN 5250

cmap_ae

Collection of autoencoder models trained on Connectivity Map data

cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

comptox_ai_data

Utilities and scripts for preprocessing data sources in ComptoxAI

generalizability

Clinical trial generalizability project

gexpro

A library and toolkit for common representation and analysis of gene expression profile data

hibachi

Data simulation software that creates data sets with particular characteristics

jdr.bio

Joe Romano's personal website

JDRomano2

jdromano2.github.io

Joe Romano's personal web page

ncats-apis

neo4j-movies-template

A Neo4j movies React application with backends in Python/Flask and Node/Express.

prehnromanowedding

psb-gnn

GNN applications in predictive toxicology - use-case study for Tox21 QSAR modeling

psb_venom_taxonomy

Code and data used in PSB 2016 submission regarding venom taxonomies

PyGraphETL

Terminal-based ETL toolkit for graph databases

saraheprehndds.com

Professional online profile of Sarah E. Prehn, DDS

smdb_search

Command line tool for querying SemMedDB (stored in local MySQL database)

stk

STK - A semantic toolkit for ontologies

strix

Library and command line tool for interacting with OWL2 ontologies, aimed at supporting AI applications of bioontologies.

venomkb-admin

Administration dashboard for VenomKB's back-end database

venomkb_code

Repository containing the code used to build the databases on VenomKB

VenomKB_old

VenomKB

venomseq

Python package to perform data analysis for the VenomSeq workflow

yggdrasil

A high-performance toolkit for building and interacting with biomedical OWL ontologies