Joe Hilton's repositories
JBHilton.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
beta-poisson-epidemics
The notebook(s) in this repository are designed to accompany an upcoming paper by Joe Hilton and Ian Hall which introduces a beta-Poisson mixture model for secondary case count data in the early stages of an infectious disease outbreak.
processing-household-composition-data
The scripts in this repository construct histograms of age-stratified household compositions from census data for use in infectious disease modelling.
hilton-keeling-estimating-R0
The code in this repository accompanies our upcoming paper "Estimation of country-level basic reproductive ratios for novelCoronavirus (COVID-19) using synthetic contact matrices". A preprint version of this paper is available at https://www.medrxiv.org/content/10.1101/2020.02.26.20028167v1. Some of our notation has changed between the preprint and the submission version of the paper. In particular, the age-specific susceptibility is now denoted by sigma rather than z.
SBIDER_snacks_repo
Test repository for sbider snacks meeting
HiltonKeeling_EndemicDiseases
The scripts in this repository can produce all of the results presented in Hilton and Keeling's paper "Incorporating household structure and demography into models of endemic disease".